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a Department of Biomedical Sciences, Ontario Veterinary College, University of Guelph,Guelph, Ontario, Canada N1G 2W1
| ABSTRACT |
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| INTRODUCTION |
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The inactive X chromosome displays several characteristics that are useful for its identification: it is heterochromatic and hypoacetylated [911]; it replicates later in the cell cycle than other chromosomes [10, 12]; and except for genes that escape inactivation, loci on the inactive X chromosome are transcriptionally silent [8]. Cytogenetic and biochemical analyses of the pattern of X chromosome inactivation in the mouse embryo [1, 13] have shown that at the blastocyst stage (Days 3.54 of development), the paternal X chromosome in the trophectoderm becomes late replicating and transcriptionally inactive [14, 15], while in the embryonic ectoderm, X inactivation occurs later (on Day 6.5 of development) and involves either the paternal or maternal X chromosome [16].
Molecular events leading to the inactivation of the X chromosome are not fully understood. However, cytogenetic and molecular evidence suggests the presence of an X inactivation center (XIC) that participates in the initiation (and spreading) of inactivation in one of the X chromosomes [1720]. The human X inactive-specific transcript (Xist), and its murine homologue (Xist) exclusively transcribed from the inactive X chromosome, map to XIC, suggesting its possible role in the process of X chromosome inactivation [18, 19, 21]. Studies showing that Xist expression is a prerequisite for dosage compensation in vitro and during early mouse embryo development are consistent with a role for Xist in the initiation of X chromosome inactivation [2224].
Comparison of Xist sequence in a range of mammals revealed a highly conserved region at the 5' end [25], providing a molecular tool for further characterization of this phenomenon in species other than the human and mouse. However, despite knowledge of the XIC and the considerable agricultural interest in embryo sex identification based on X-linked gene activity, information on X chromosome inactivation during embryogenesis in domestic animals is scanty. In the present study, reverse transcription-polymerase chain reaction (RT-PCR) was used to test for Xist expression in bovine somatic tissues and preattachment embryos and to determine the temporal relationship of Xist expression to bovine X chromosome inactivation.
| MATERIALS AND METHODS |
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Holstein-Freisian cows were superovulated with 3.0, 2.5, 2.0, and 1.5 mg Folltropin (Vetrepharm, Willowdale, ON, Canada) administered twice daily as i.m. injections starting on Day 9 of the estrous cycle (day of estrous = Day 0), followed by 2 injections (i.m.; 12 h apart) of Cloprostenol (Estrumate; Schering Canada, Inc., Pointe-Claire, PQ) on the third day of treatment. Artificial insemination with frozen-thawed semen was performed twice, at a 12-h interval, after estrus detection. Embryos were recovered on Days 14 and 15 of development by a transcervical uterine flush as described by Betteridge [26]. Elongated blastocysts were transferred into holding medium consisting of PBS supplemented with 1.0 mg/ml glucose, 0.036 mg/ml sodium pyruvate, and 10 mg penicillin-streptomycin at a final concentration of 10 000 U/ml penicillin G, and 10 000 µg/ml streptomycin (Canadian Life Technologies, Burlington, ON, Canada), 4 mg/ml BSA fraction V (Sigma Chemical Co., St. Louis, MO), and 200 ml/L fetal calf serum for classification and measurement. A biopsy of approximately 2 mm in length was taken from the tip of each trophoblast and transferred to 1.0 ml of in vitro culture medium (IVC) consisting of tissue culture medium (TCM)-199 (Canadian Life Technologies) supplemented with 10% steer serum (SS), 0.35% BSA, 0.2 M sodium pyruvate (Sigma), 0.5% penicillin-streptomycin, 50 µg/ml gentamycin, and 0.2 M L-glutamine (Sigma) for incubation in an atmosphere of 5% CO2 in air at 39°C.
In Vitro Bovine Embryo Production
Bovine embryos were produced by in vitro oocyte maturation, fertilization, and culture as previously described [27]. Cumulus-oocyte complexes were obtained by follicular aspiration and collected into Ham's F-10 medium (Canadian Life Technologies) supplemented with 2.0% SS, 1.0% Hepes buffer (Canadian Life Technologies), 1.0% NaHCO3 (Fisher Scientific, Nepean, ON, Canada), 2 IU/ml heparin (Organon Teknica, Toronto, ON, Canada), and 1.0% penicillin-streptomycin maintained at 37°C. In vitro maturation was carried out for 2224 h, at 39°C in a humidified atmosphere of 5% CO2 in air, in Hepes-buffered TCM-199 supplemented with 0.2 M sodium pyruvate, 0.2 M L-glutamine (Sigma), 0.5% penicillin-streptomycin, and 10% SS, under silicone oil (Fisher). Cumulus cells were removed from cumulus-oocyte complexes by vigorous pipetting in 3 ml Hepes-buffered Tyrode's albumin lactate pyruvate (TALP) medium and rinsed in TALP supplemented with 20 µg/ml heparin (IVF-TALP). Twenty oocytes were transferred into a 95-µl droplet of IVF-TALP containing 5 µl of bovine oviductal epithelial cell (BOEC) suspension under silicone oil. Approximately 1 x 106 sperm/ml were added to the 95-µl droplets containing oocytes. At 18 h postinsemination, presumptive zygotes were washed twice in 1 ml IVC medium and cocultured with BOEC (5-µl suspension) in 50 µl IVC medium for 8 days in a humidified atmosphere of 5% CO2 in air at 39°C.
RNA Extraction from Adult Tissues andPreattachment Embryos
Total RNA was extracted from male and female adult tissues and from the chorioallantois of a Day 90 female fetus with a combination of phenol and guanidine isothiocyanate procedure (Trizol) according to specifications of the manufacturer (Canadian Life Technologies). Preattachment embryos at various stages (from the 2-cell to the hatched blastocyst stage) were washed four times with PBS supplemented with 0.1% polyvinylpyrrolidone (Sigma). Remnants of granulosa cells were removed by vigorous pipetting before transferral of pools of 4075 embryos in 5 µl of PBS + 0.1% PVP medium into microcentrifuge tubes. Tubes were plunged directly into liquid nitrogen and stored at-70°C until RNA extraction. The number of embryos used for RNA extraction at each stage of development is shown in Table 1.
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RNA from groups of embryos was extracted as described by Hahnel et al. [28]. DNase treatment was performed as described by Gaudette et al. [29] in 50 µl of DNase buffer (2 M NaCl, 1 M Tris, pH 8.0, 1 M MgCl2, 0.1 M CaCl2). Total RNA from adult somatic tissues and embryos was digested for 1520 min with 5 units of RQ1 DNase (Promega Corp., Madison, WI) at 37°C, followed by a Tris-saturated phenol:chloroform extraction and ethanol precipitation.
RT-PCR
RNA samples were divided into two aliquots for RT; one was used in the presence of reverse transcriptase and the other in the absence of reverse transcriptase as a control for genomic DNA contamination. Complementary DNA synthesized from 1 µg of total RNA extracted from tissues, and all embryo RNA extracts, were primed with 25 µg/ml oligo-dT (New England Biolabs, Boston, MA) in 4 µl (5-strength) first strand buffer (Canadian Life Technologies), 10 mM dithiotreitol (Canadian Life Technologies), 0.2 µM dNTPs, 0.5 U/µl RNasin (Promega Corp.), and 200 U Maloney murine leukemia virus reverse transcriptase (Superscript II; Canadian Life Technologies). RT was carried out at 45°C for 1 h. Total cDNA was diluted with 30 µl double-distilled H2O and stored at-20°C. Primers were designed to amplify a 463-base pair (bp) PCR product from the 5' region of bovine Xist (a 650-bp nucleotide sequence) described by Hendrich et al. [25]. Primer sequences (5'3') for upstream primer P133 and downstream primer P596 are illustrated in Table 2. Primers that cross-react with bovine ß- and
-actin forms [30] were used as positive controls for the presence of cDNA. In all, 1 µl cDNA from adult tissues or 5 µl of embryo cDNA per 50-µl reaction mixture was used for amplification of actin transcripts. For the analysis of Xist gene expression, 1 µl cDNA from adult tissues or 30 µl of embryo cDNA per 50-µl PCR reaction mixture was used. Sequence amplification from cDNA samples was performed according to Kay et al. [22]. In brief, a 50-µl PCR reaction mixture consisting of 0.2 µM dNTPs, 0.50 µM primers, 50 mM KCl, 10 mM Tris-HCl (pH 8.0), 1.5 mM MgCl2, 0.1% Triton X, and 1.25 U Taq DNA polymerase (Promega) was heated to 95°C and held for 5 min; this step was followed by 30 cycles of denaturation at 95°C for 1 min, annealing at 55°C for 1 min, and extension at 72°C for 2 min with a final extension step at 72°C for 15 min. PCR products were resolved in 2% agarose gels and photographed under ultraviolet light. As a control for contamination, a blank lane consisting of PCR reaction mixture with double-distilled water instead of cDNA was included in each gel. For the second-round PCR reaction in embryo samples, nested primers (Table 2) that amplify a 283-bp sequence internal to the first-round primers in a 50-µl PCR reaction mixture, with cycling conditions exactly as described above, were used with the exception that 1 µl first-round PCR product was used as a template.
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Purification and Sequencing of PCR Products
PCR products obtained after amplification of cDNA samples from somatic tissues and preattachment embryos were gel purified with a Qiaquick DNA purification kit (Qiagen, Mississauga, ON, Canada) according to the manufacturer's specifications. Sequencing was performed using 5 µl of DNA template with 2 pmol/ml of nested primers (Table 2) by the method of dye terminator labeling in an ABI 377 Prism automated sequencer (Guelph Molecular Centre, Guelph, ON, Canada). Sequence identity was determined with the basic local alignment search tool (BLAST) algorithm [31].
Autoradiography
The late-replicating X chromosome was identified by the preferential deposition of silver grains on the X chromosome of cells after [3H]thymidine incorporation and autoradiography. In vitro-produced morulae, early blastocysts, blastocysts, expanded blastocysts, and hatched blastocysts were incubated in IVC medium supplemented with 2 µCi/ml [3H]thymidine (Amersham, Oakville, ON, Canada) for a 4-h period, washed twice in freshly prepared culture medium, and incubated in the presence of 0.05 µg/ml Colcemid (Canadian Life Technologies) for an additional 4 h. Embryos were exposed to a hypotonic solution (1.0% sodium citrate) for 4 min and individually fixed on glass slides with methanol:acetic acid [32]. After staining of the slides with 4% buffered Giemsa, a total of 62 embryos identified as females were selected, and metaphases were photographed before destaining and processing of the slides for autoradiography [32]. Radiolabeled slides were dipped into NTB2 Kodak emulsion (Kodak Tetrachem, Rexdale, ON, Canada) maintained in a water bath at 40°C and were air dried in a dark room for 34 h, stored in light-proof boxes, and maintained at 4°C for 24 h. The slides were developed in D-19 (Kodak Tetrachem) for 3 min and stained with 4.0% buffered Giemsa. Silver grain deposition indicative of labeled thymidine incorporation was examined under a Leitz Aristoplan (Leitz Wetzlar GBH, Wetzlar, Germany) light microscope at x100 objective. Preferential deposition of silver grains on one of the X chromosomes was considered to be indicative of a late-replicating X chromosome.
A group of 14 female embryos at the elongated blastocyst stage (nine Day 14 and five Day 15) were cultured in IVC medium supplemented with 2 µCi [3H]thymidine (Amersham) for a period of 4 h followed by a further incubation for 2 h in the presence of Colcemid (0.05 µg/ml; Canadian Life Technologies). After a hypotonic treatment for 1015 min in 1% sodium citrate, embryos were fixed in 1.0 ml of methanol:acetic acid 3:1 (v:v) for 30 min and transferred to fresh fixative for a minimum of 12 h. The fixative was removed, and 0.5 ml of 50% acetic acid in distilled water was added to the embryos to disperse the cells into a suspension and placed on previously cleaned glass slides [33]. Slides were stained with 4% Giemsa for 4 min, and female embryos showing well-spread metaphases were photographed and destained before processing for autoradiography as described above.
| RESULTS |
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Complementary DNA samples from adult liver, kidney, chorioallantois, and bovine oviductal epithelial cells, subjected to RT-PCR amplification with primers designed from the bovine Xist nucleotide sequence [25], revealed the presence of Xist transcripts in female somatic tissues (Fig. 1). The female samples evaluated as positive controls for this experiment showed a consistent PCR product (Fig. 1A) corresponding to the expected actin amplicon size (450 bp), attesting to the technical reliability of the RT-PCR used in the present study. Samples of RNA in which reverse transcriptase was omitted (the negative control for the RT reaction; Fig. 1, lanes 3, 5, 7, and 9), as well as the blank PCR mixture (lane 10), showed no amplification, thus eliminating the possibility of genomic DNA contamination or artifact.
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A distinct band representing the amplified Xist sequence was detected only from female samples including the chorioallantois, in which RNA RT appears to have been successful (lanes 2, 4, 6, and 8); however, the amplicon from kidney samples was faint (Fig. 1B). Actin amplicons of the expected size (450 bp) were displayed by all male somatic tissues tested (Fig. 2A). In contrast, Xist expression was not detected in male tissues except in the testis (Fig. 2B, lane 6), in which a faint amplicon of the expected size was consistently observed. Nucleotide sequence analysis of the PCR products after gel purification revealed a 96% homology with the murine Xist, and the BLAST sequence search comparison [31] proved identity with the previously reported bovine Xist (clone pcow1) from Bison bonasus, [25] from which Bos taurus Xist differs only in T for A substitutions at positions 558561.
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Xist Expression in Preattachment Embryos
Expression patterns of Xist and of actin (used as a positive control) during bovine embryonic development are illustrated in Figure 3. Actin transcripts were detected at all developmental stages examined from the 2-cell stage (48 h postinsemination; lane 2) to the expanded blastocyst stage on Day 9 of in vitro development (lane 12), with greater intensity at blastocyst stages (lanes 10 and 12). No Xist expression was evident in embryos at the 2-cell stage (Fig. 3B, lane 2) after a single round (30 cycles) of PCR amplification. The first indication of Xist expression was seen in samples of 8-cell-stage embryos (on Day 3 of in vitro development), in which a distinct amplicon of the size corresponding to bovine Xist (463 bp) was consistently observed. Xist amplicons were faint but consistently detected from the 8-cell stage and at all stages examined up to and including expanded blastocyst stage on Day 8 of in vitro development (lanes 4, 6, 8, 10, and 12). No amplification products were evident in samples representing DNase-treated RNA samples amplified in the absence of reverse transcriptase or in blank PCR reaction mixtures in which cDNA was not included, indicating absence of exogenous DNA contamination. Nucleotide sequence analysis of the 463-bp band revealed 97% homology with bovine (Bison bonansus) Xist (clone pcow1). Amplification of 400 and 700 bp was observed in lanes containing RNA samples from preattachment embryos except for expanded blastocysts and not in blank or RT control lanes. Although amplified with the bovine Xist outside primers, neither of the additional bands had other significant homology to Xist. Analysis of the 700-bp band revealed identity with a ribosomal subunit of Escherichia coli, corresponding to the ribosomal RNA used as a carrier in our RNA extraction protocol. After BLAST sequence comparison, the 400-bp band showed no homology with known bovine or E. coli sequences and only low homology with other known sequences (less than 60% homology with a genomic sequence from Caenorhabditis elegans) of unknown function. In order to increase the specificity and resolution of Xist transcript detection, a second-round PCR reaction (30 cycles) was undertaken using nested primers (Table 2). With the inside primers, only amplicons of 283 bp, corresponding in size to the Xist transcripts, were consistently detected from the 2-cell stage to the blastocyst stage. No other bands were observed on second-round PCR. The 283-bp amplicons were observed only with samples that had been reverse transcribed and not in PCR blanks, again indicating no DNA contamination (Fig. 4). Nucleotide sequence analysis of PCR product amplified with the nested primers revealed 100% homology with bovine Xist (clone pcow1).
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X Chromosome Inactivation
Metaphase plates from cultured bovine blastocysts displaying a normal female chromosome complement, including the two submetacentric X chromosomes, are presented in Figure 5. A late-replicating X chromosome, as evidenced by preferential deposition of silver grains on one of the X chromosomes in at least one metaphase per embryo, was observed in 30 of 48 (62.5%) female blastocysts of different developmental stages and none of 13 female morulae produced in vitro. Among the 48 blastocysts, 2 of 7 (28.5%) early blastocysts, 6 of 13 (46.1%) blastocysts, 8 of 11 (72.7%) expanded blastocysts, and 14 of 17 (77.7%) hatched blastocysts revealed a late-replicating X chromosome. All Day 14 (n = 9) and Day 15 (n = 5) female elongated blastocysts revealed metaphase spreads with a late-replicating X chromosome. Of the 109 labeled metaphases from Day 14 embryos and the 150 from Day 15 embryos, 17 (16.0%) and 82 (55.0%), respectively, revealed a late-replicating X chromosome. Figure 5, A and B, presents the two X chromosomes of an early blastocyst before autoradiography and after autoradiography, respectively, the latter showing preferential deposition of silver grains on one of the X chromosomes representing the late-replicating X chromosome. Metaphase plates from a Day 14 and a Day 15 female embryo before and after autoradiography are presented in Figure 5, CF; preferential deposition of silver grains is seen on one of the X chromosomes after autoradiography in Figure 5, D and F. Late-replicating regions were also observed near the centromere on a few autosomes.
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| DISCUSSION |
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The patterns of Xist expression in human preimplantation embryos appear to vary greatly. Xist transcripts were detected using nested-primer PCR at the 1-cell stage in some embryos [35], while Ray et al. [36] reported Xist expression consistently from the 5- to 10-cell stage onward. The reason(s) for the difference in the timing of Xist expression in the human embryos is not clear. However, Daniels et al. [35] suggest that Xist expression at the 1-cell stage may be due to a genome-wide demethylation reported to be taking place during early cleavage [37]. In contrast, Xist expression in the mouse embryo was detected only from the 4-cell stage onward using a nested-primer approach [22, 23]. Furthermore, human embryos display Xist expression from both the paternal and the maternal X chromosomes during early cleavage stages [35, 36]. This pattern is substantiated by in situ hybridization data that confirmed a low level of Xist expression from both the active and inactive X chromosomes in murine embryos [38, 39]. In our study, Xist transcripts were initially detected in pools of embryos at the 8-cell stage after a single round of PCR amplification. Consistent detection in bovine embryos from the 8-cell stage onward may reflect a substantial increase in embryonic Xist transcription. It is possible that the transcripts detected at the 2-cell stage correspond to the low level, biallelic Xist expression reported by in situ hybridization in mouse embryos at the 8-cell stage [38, 39].
Nonspecific amplification of a 700-bp and a 400-bp sequence was noted in embryo samples that, due to small amounts of total RNA, required addition of E. coli carrier RNA to facilitate extraction. The 700-bp sequence had identity with E. coli RNA, while the 400-bp sequence remains unknown. Since neither sequence was present in reverse transcriptase-negative or blank controls, the possibility of exogenous DNA contamination as a source of the sequences was ruled out. The presence of both sequences at the 2- to 4-cell stage when Xist amplicons were not visible suggests that Xist expression is independent of these two sequences. Also, neither sequence was amplified in the second-round PCR, indicating lack of shared homology with the internal primers.
Although a low level of transcription is evident in 2-cell-stage bovine embryos [40], a major burst of embryonic transcription in this species occurs at the 8-cell stage [41, 40]. This pattern of transcription is consistent with the rapid translation of maternal mRNA during the first cleavage divisions [42], followed by the transition from maternal to embryonic control of gene expression. Our observations on Xist expression suggest that even after the transition from maternal to embryonic control [41], the levels of de novo mRNA synthesis may not be adequate to promote X inactivation in the relatively large number of cells generated in early embryos prior to the blastocyst stage. Alternatively, it is possible that the Xist transcripts are rapidly degraded.
The relatively faint Xist amplicons detected in preattachment embryos as compared to adult female cells may be a reflection of the smaller number of cells undergoing inactivation at this stage. Our cytogenetic data revealed that the number of metaphases showing an inactive X chromosome increases during subsequent divisions as more blastomeres "commit" to X chromosome inactivation. Similarly, the higher levels of Xist expression evident in adult female somatic tissues relative to embryonic Xist expression in the present study may be the result of accumulated transcripts in the former, since quantitative RT-PCR assays have shown that the levels of Xist expression during embryonic development and in embryonic stem cell lines are considerably lower than those observed in adult female somatic tissues [43].
Xist expression was not detected in any adult male tissue examined with the exception of testis, confirming its predominantly female expression. Testicular cDNA displayed a single 463-bp PCR product of somewhat lower intensity compared to that obtained from female tissues as has been reported in human and mouse testes [22]. The role of Xist during spermatogenesis is not clear, although X inactivation has been considered to be essential for germ cell survival in normal males [44, 45], possibly through protecting the unpaired regions of the X and Y chromosomes from nuclease digestion or from incorrect (nonhomologous) pairing [46].
Late replication was first observed in a few cells of a small percentage of bovine blastocysts on Day 8 of development. At this stage, embryos contain fewer than 80 blastomeres and a small blastocoele. The percentage of embryos showing an inactive X chromosome was strikingly higher at the expanded blastocyst stage (on Day 8 after fertilization), when conceptuses display more than 100 cells and a fully differentiated inner cell mass and trophectoderm. Elongated blastocysts (Days 14 and 15 of development) showed evidence of late replication in all female embryos evaluated, indicating that cells exhibiting X inactivation increase progressively as embryos reach more advanced developmental stages. The higher percentage of cells displaying a late-replicating X chromosome noted in Day 15 embryos could well be a reflection of the larger cell number in these embryos and the higher number of cells undergoing X inactivation in the trophectoderm.
In conclusion, Xist expression in the bovine embryo appears to be initiated as early as the 2-cell stage, while a late-replicating (inactive) X chromosome is not readily evident until the early blastocyst stage (on day 8 after in vitro fertilization). Cells committed to this process increase progressively during embryo development, and it is strikingly evident as the blastocyst elongates. Although the process of X inactivation is a highly conserved characteristic among female mammals [3], the pattern of dosage compensation for human genes differs from that in their mouse homologues [8], suggesting evolutionary modifications in some cases. Further analysis of the activity status of different X-linked genes could increase our understanding of X chromosome inactivation in mammals and identify the mechanisms adopted by different species for gene control.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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2 Correspondence. FAX: 519 767 1450; waking{at}uoguelph.ca ![]()
Accepted: October 27, 1998.
Received: July 22, 1998.
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