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Institut de Recerca i Tecnologia Agroalimentàries Center of Aquaculture,3 Sant Carles de la Ràpita, Tarragona 43540, Spain
Génomique et Physiologie des Poissons,4 Université Bordeaux 1, UMR NuAGe, 33405 Talence, France
Institut de Recerca i Tecnologia Agroalimentàries Lab IRTA-ICM (Consejo Superior de Investigaciones Científicas),5 08003 Barcelona, Spain
ABSTRACT
Transcripts encoding a fatty acid-binding protein (FABP), Fabp11, and two isoforms of very low-density lipoprotein receptor (Vldlr; vitellogenin receptor) were characterized from the ovary of Senegalese sole (Solea senegalensis). Phylogenetic analyses of vertebrate FABPs demonstrated that Senegalese sole Fabp11, as zebrafish (Danio rerio) homologous sequences, is part of a newly defined teleost fish FABP subfamily that is a sister clade of tetrapod FABP4/FABP5/FABP8/FABP9. RT-PCR revealed high levels of vldlr transcript splicing variants in the ovaries and, to a lesser extent, in somatic tissues, whereas fabp11 was highly expressed in the ovaries, liver, and adipose tissue. In situ hybridization analysis showed vldlr and fabp11 mRNAs in previtellogenic oocytes, whereas no hybridization signals were detected in the larger vitellogenic oocytes. Transcript expression of fabp11 was strongly upregulated in somatic cells surrounding atretic follicles. Real-time quantitative RT-PCR demonstrated that ovarian transcript levels of vldlr and fabp11 had a significant positive correlation with the percentage of follicles in previtellogenesis and atresia, respectively. These results suggest that the expression level of vldlr transcripts may be used as a precocious functional marker to quantify the number of oocytes recruited for vitellogenesis and that fabp11 mRNA may be a very useful molecular marker for determining cellular events and environmental factors that regulate follicular atresia in fish.
follicular development, gametogenesis, gene regulation, oocyte development, ovary
Atresia, a follicular degeneration and resorptive process, is a normal physiologic event of vertebrate ovarian morphogenesis. In teleost fish, atresia is involved in normal ovarian growth and postovulatory regression, mostly in females that are not able to carry out maturation or ovulation after vitellogenesis. The presence of atretic follicles is also frequently associated with environmental stress or changes in hormone levels during vitellogenesis [1–3]. For example, ovarian atresia may be caused by hypophysectomy [1, 4] or exposure to environmental contaminants [5, 6]. It is well established in mammals that ovarian follicular degeneration is a hormonally controlled apoptotic process and is an event of programmed cell death [7–10]. While apoptosis has been demonstrated in the ovary of several fish species [11, 12] and in response to the presence of endocrine-disrupting chemicals [13, 14], a relationship between programmed cell death and atresia has not been firmly established in fish. In addition, induced proteolysis of oocyte yolk proteins may lead to follicular atresia [15]. Hormonal factors produced in fish gonads seem to play a central role in ovarian follicle growth, maintenance of ovarian synchronicity, and the process of ovarian follicular atresia [16, 17].
In teleost fish, as in other oviparous vertebrates, female germinal cells accumulate the informational components and nutritional reserves needed for embryo development [18–21]. Oocyte growth occurs through the uptake of plasma egg yolk precursor proteins, predominantly vitellogenin (Vtg). This glycolipophosphoprotein is synthesized mainly in the liver under estrogenic control; is specifically incorporated in the oocyte by receptor-mediated endocytosis through the very low-density lipoprotein (VLDL) receptor precursor (VLDLR), also named in oviparous animals Vtg receptor (VtgR); and is further cleaved and processed into yolk proteins. The VLDLR gene (vldlr) belongs to the supergene family of low-density lipoprotein receptor (LDLR)-related proteins [22]. These plasma membrane receptors have co-evolved in egg laying and viviparous animals to support ligand transport inside the cell and to sustain the reproductive effort of oviparous species [23, 24]. Fatty acid-binding proteins (FABPs) are highly conserved cytoplasmic proteins that bind long-chain fatty acids and other hydrophobic ligands. It is thought that FABPs roles include fatty acid uptake, transport, and metabolism. These may also be responsible in the modulation of cell growth and proliferation [25, 26]. Different FABP types have been immunodetected in rodent ovaries at different physiologic stages [27–30]. It has also been demonstrated that the expression of some genes coding for proteins related to lipid and lipoprotein metabolism, including FABPs and LDLR, are among the most regulated in the rat ovary after human chorionic gonadotropin administration [31]. Previtellogenic fish oocytes express high amounts of vldlr and fabp3 transcripts [32, 33], and the reabsorption of the yolk in atretic follicles produces the appearance of egg yolk proteins associated with plasma high-density lipoproteins [34], which enlighten the importance of lipid metabolism and its related genes in follicular growth and degeneration.
Histology of teleost fish gonadal tissue is routinely used to describe and quantify morphologic stages, including the number of vitellogenic and atretic follicles [1, 2, 35], but no molecular markers are currently available to study the mechanisms underlying or regulating the balance between follicular development and atresia in teleosts. Here we describe the molecular characterization from Senegalese sole (Solea senegalensis) ovary of cDNAs of VLDLR, including two transcript variants, and of an Fabp that was demonstrated to be part of a new type, named Fabp11, specific to teleost fishes. The results presented indicate that these transcripts were expressed in previtellogenic oocytes, and fabp11 transcript expression was strongly upregulated in somatic cells surrounding atretic follicles. Furthermore, we provide evidence that ovarian transcript levels of vldlr and fabp11 had a significant positive correlation with the percentage of follicles in previtellogenesis and atresia, respectively.
Procedures relating to the care and use of animals were approved by the Ethics Committee from Institut de Recerca i Tecnologia Agroalimentàries (Spain) in accordance with the Guiding Principles for the Care and Use of Laboratory Animals.
Adult Senegalese soles were raised as previously described [36], and females were killed during three consecutive years at different times of the reproductive cycle, corresponding to different folliculogenesis stages [36, 37]. The body and gonads of each animal were weighed to calculate the gonadosomatic index (GSI: gonad weight/body weight x 100). A piece of the gonad adjacent to the piece sampled for subsequent RNA extraction was fixed in modified Bouin solution (75% picric acid and 25% formalin) for histologic analysis.
Ovaries fixed in modified Bouin solution for 3–4 h were dehydrated, embedded in paraplast, sectioned at 5 µm, and stained with hematoxilin-eosin. The percentages of previtellogenic, early vitellogenic, vitellogenic, and atretic oocytes were calculated by counting 100–150 total oocytes in at least three different histologic sections from the same ovary, as previously described [36].
Construction of an Ovarian cDNA Library and Isolation of Senegalese Sole vldlr and fabp11 cDNAs
Total RNAs were extracted from vitellogenic ovaries using the Qiagen RNeasy Maxi Kit (Qiagen, Courtaboeuf, France), and a cDNA library was constructed in Uni-ZAP XR vector (Stratagene, Amsterdam, The Netherlands) following the manufacturer's instructions. Full-length vldlr cDNA was obtained after screening with a 32P-labeled rainbow trout (Oncorhynchus mykiss) vldlr cDNA fragment. The 794-bp probe used was generated after cleavage of trout vldlr cDNA (GenBank accession number OMY417877) [38] with SmaI and XbaI restriction enzymes at 1063 and 1857 bp, respectively.
Three positive clones were identified as vldlr cDNA: S9A5, corresponding to the full-length vldlr transcript, S5A, a truncated vldlr transcript sequence, and S8A2, a chimeric sequence including 5' 579 bp that contained the 402-bp full-length translated region of a cDNA encoding a protein subsequently named Fabp11 (see below), as well as part of the 5' end of the vldlr transcript sequence. The missing 107-bp 3' untranslated region of the fabp11 transcript was amplified by PCR with the SHF3-S1 sense primer (5'-ACGACAGGAAGACCAAGACCG-3') and 3' rapid amplification of cDNA ends (RACE) primer, using the previously described procedure [39] and PCR reaction profile [40].
The VLDLR protein sequence deduced from clone S9A5 lacked the O-linked sugar domain and was, therefore, classified as a VLDLR– isoform. The cDNA encoding the VLDLR+ isoform was amplified with S-og-S1 primer (5'-AGCTCATCCAGCTGTCAG-3'), located 169 bp upstream, and S-og-AS1 primer (5'-TCCACATGAGGAAACCAC-3'), located 122 bp downstream from the alternative splicing site of primary transcripts, leading or not to a putative O-linked sugar domain.
Deduced protein sequences were extracted from GenBank/EBI (http://www.ncbi.nlm.nih.gov/) or UniProt (http://www.ebi.uniprot.org/index.shtml) databases or, in a few cases, were deduced from Ensembl Takifugu rubripes (ETR) (http://www.ensembl.org/Takifugu_rubripes/index.html) or Tetraodon Genome Browser (TGB) (http://www.genoscope.cns.fr/externe/tetranew/). Accession numbers (the number in parentheses after the accession number refers to the code number used for sequence designation) for vertebrate FABPs were UniProt:P07148 (1) for FABP1, UniProt:P12104 (2) for FABP2, UniProt:P05413 (3) for FABP3, UniProt:P15090 (4) for FABP4, UniProt:Q01469 (5) for FABP5, UniProt:P51161 (6) for FABP6, UniProt:O15540 (7) for FABP7, and UniProt:P02689 (8) for FABP8 of human (Homo sapiens); UniProt:P12710 (9) for FABP1, UniProt:P55050 (10) for FABP2, UniProt:P11404 (11) for FABP3, UniProt:P15090 (12) for FABP4, UniProt:Q05816 (13) for FABP5, UniProt:P51162 (14) for FABP6, UniProt:P51880 (15) for FABP7, UniProt:P24526 (16) for FABP8, and UniProt:O08716 (17) for FABP9 of mouse (Mus musculus); UniProt:P02693 (18) for FABP2, UniProt:P07483 (19) for FABP3, UniProt:P70623 (20) for FABP4, UniProt:P55053 (21) for FABP5, UniProt:P80020 (22) for FABP6, UniProt:P55051 (23) for FABP7, and UniProt:P55054 (24) for FABP9 of rat (Rattus norvegicus); UniProt:P49924 (25) for FABP1, UniProt:Q45KW7 (26) for FABP2, UniProt:O02772 (27) for FABP3, UniProt:O97788 (28) for FABP4, UniProt:Q2EN74 (29) for FABP5, and UniProt:P10289 (30) for FABP6 of pig (Sus scrofa); UniProt:Q90WA9 (31) for FABP1, UniProt:Q7ZZZ5 (32) for FABP2, UniProt:Q6DRR5 (33) for a protein annotated here FABP3, UniProt:Q90X55 (34) for FABP4, UniProt:Q5ZIR7 (35) for a protein annotated here FABP5, UniProt:Q05423 (36) for a protein annotated here FABP7, GenBank:XP_418309 (37) for FABP8, and UniProt:P80226 (38) for FABP10 of chick (Gallus gallus); deduced from clone GenBank:CN098757 (39) for a protein annotated here FABP2, and UniProt:Q28CE2 (40) for FABP7 of Western clawed frog (Xenopus tropicalis); UniProt:Q6PGR8 (41) for a protein annotated here FABP3a, UniProt:Q6GPY9 (42) for a protein annotated here FABP3b, UniProt:Q5PPW3 (43) for a protein annotated here FABP7, and UniProt:Q6GPT0 (44), UniProt:Q5FWM7 (45), UniProt:Q66L00 (46), and UniProt:Q6P705 (47) for deduced unclassified FABPs of African clawed frog (Xenopus laevis); GenBank:BC095259 (48) for Fabp1a, GenBank:XM_680590 (49) for Fabp1b, UniProt:Q9PRH9 (50) for Fabp2, UniProt:Q8UVG7 (51) for Fabp3, GenBank:NP_001002076 (52) for Fabp6, UniProt:Q9I8N9 (53) for Fabp7a, UniProt:Q6U1J7 (54) for Fabp7b, UniProt:Q9I8L5 (55) for Fabp10, UniProt:Q66I80 (56) for a protein annotated here Fabp11a, and UniProt:Q503X5 (57) for a protein annotated here Fabp11b of zebrafish (Danio rerio); UniProt:Q90W92 (58) for Fabp3, UniProt:Q645P9 (59) for a protein annotated here Fabp10, and deduced from clone GenBank:CN985071 (60) for a protein annotated here Fabp11 of killifish (Fundulus heteroclitus); deduced from clone GenBank:CA845456 (61) for a protein annotated here Fabp2a, ETR:NEWSINFRUT00000154534 (62) for a protein annotated here Fabp2b, ETR:NEWSINFRUT00000161229 (63) for a protein annotated here Fabp10, and deduced from clone GenBank:CA847283 (64) for a protein annotated here Fabp11 of torafugu (T. rubripes); GenBank:AAM22208 (65) for a protein annotated here Fabp11 of orange-spotted grouper (Epinephelus coioides); deduced from clone GenBank:CK890396 (66) for a protein annotated here Fabp1, and UniProt:Q6R758 (67) for a protein annotated here Fabp3 of Atlantic salmon (Salmo salar); deduced from clone GenBank:BX866673 (68) for a deduced protein annotated here Fabp2, UniProt:O13008 (69) for Fabp3, deduced from clone GenBank:CX251727 (70) for a deduced protein annotated here Fabp10, deduced from clone GenBank:CA357251 (71) for a deduced protein annotated here Fabp11a, and deduced from clone GenBank:CF752694 (72) for a deduced protein annotated here Fabp11b of rainbow trout (Oncorhynchus mykiss); UniProt:Q4S6K4 (73) for a protein annotated here Fabp2, UniProt:Q4RMM1 (74) for a protein annotated here Fabp7a, UniProt:Q4T8P8 (75) for a protein annotated here Fabp7b, TGB:GSTENT00003005001 (76) for a protein annotated here Fabp10, and GenBank:CR733066 (77) for a protein annotated here Fabp11 of green puffer (Tetraodon nigroviridis); deduced from clone GenBank:AM144272 (78) for a protein annotated here Fabp3, UniProt:Q2PHF0 (79) for Fabp7, deduced from clone GenBank:BJ910672 (80) for a protein annotated here Fabp10, and deduced from clone GenBank: BJ875298 (81) for a protein annotated here Fabp11 of medaka (Oryzias latipes); UniProt:O57668 (82) for Fabp3, and UniProt:O57691 (H6-FABP; 83) for a protein annotated here Fabp11 of crocodile icefish (Cryodraco antarcticus); UniProt:O57669 (84) for Fabp3, and UniProt:O57663 (H6-FABP; 85) for a protein annotated here Fabp11 of black rockcod (Notothenia coriiceps); UniProt:O57670 (86) for Fabp3, and UniProt:O57665 (H6-FABP; 87) for a protein annotated here Fabp11 of humped rockcod (Gobionotothen gibberifrons); UniProt: O57666 (H6-FABP) (88) for a protein annotated here Fabp11 of an Antarctic dragonfish (Parachaenichthys charcoti); GenBank:BAA92355 (89) for Fabp3 of Japanese eel (Anguilla japonica); deduced from clone GenBank:BM028330 (90) for a protein annotated here Fabp3, deduced from clone GenBank:BE574176 (91) for a protein annotated here Fabp7, and deduced from clone GenBank:BM438483 (92) for a protein annotated here Fabp10 of channel catfish (Ictalurus punctatus); deduced from clone GenBank:BJ696441 (93) for a protein annotated here Fabp3 of redtail sheller (Ptyochromis sp.); deduced from clone GenBank: CF661735 (94) for a protein annotated here Fabp11 of carp (Cyprinus carpio); GenBank:AM501530 (95) for a protein annotated here Fabp11 of Senegalese sole (S. senegalensis). Accession numbers for vertebrate VLDLR/VtgR sequences used were UniProt:P98155 of human (Homo sapiens), UniProt:P98156 of mouse (Mus musculus), UniProt:P98165 of chick (Gallus gallus), UniProt:Q90W12 and UniProt:O73921 of rainbow trout (Oncorhynchus mykiss), UniProt:Q6NS01 of African clawed frog (Xenopus laevis), UniProt:Q7ZTG7 of tilapia (Oreochromis aureus), UniProt:Q6Y857 of white perch (Morone americana), and UniProt: Q2L4C1 of Senegalese sole (S. senegalensis). Accession numbers for Senegalese sole (S. senegalensis) bactin mRNAs sequences used were GenBank:DQ485686 and GenBank:AM501529.
Sequences were aligned using EMBOSS needle program and Blosum62 matrix or ClustalW (http://www.ebi.ac.uk/). The signal peptide sequence of the deduced protein was predicted using the SignalP 3.0 prediction tool (http://www.cbs.dtu.dk/services/SignalP/) using hidden Markov models trained on eukaryotes. The putative GalNAc O-glycosylation sites were predicted using NetOGlyc 3.1 server (http://www.cbs.dtu.dk/services/NetOGlyc/). The phylogenetic tree and branch support values were estimated using three different methodologies of phylogenetic reconstruction: the neighbour joining (NJ), the maximum likelihood (ML), and the Bayesian inference (BI) methods according to the procedures previously described with modifications [41]. NJ algorithm was based on the number of amino acid substitutions per site using the Poisson correction distance method. Bootstrap support values were obtained with 5000 pseudoreplicates. ML analysis was carried out with PHYML v2.4.4 [42] starting from the BIONJ tree, and the gamma distribution for rate heterogeneity across sites (
) was modeled with a four-category
distribution and a shape parameter equal to 2. The WAG substitution model was selected by ProtTest v1.3 [43], following the Akaike information criterion, as the best-fitting model among the models tested that could be used in PHYML. Bootstrap values were based on 500 pseudoreplicates to estimate support for the nodes of the ML tree. In the nonparametric bootstrap trees, bootstrap confidence level values of 80 or greater were accepted as significant. BI was performed using MrBayes v3.1.2 [44] with the WAG model of amino acid substitution provided in the package. Two simultaneous runs, each with four simultaneous Markov Chain Monte Carlo (MCMC) chains, were performed for 1 600 000 generations, after which the average standard deviation of split frequencies was 0.009795, saving the current tree to file every 100 generations for a total of 16 001 trees in the initial sample. The first 4000 trees prior to log likelihood stabilization were discarded (as burn-in), and the following 12 001 tree samples were used to estimate topology and tree parameters. A graphic representation of the majority rule consensus tree was generated, and the clades were accepted as significant at
0.90 posterior probability.
Total RNAs were extracted from a previtellogenic (GSI: 1.5%; percentage of previtellogenic oocytes: 99%; percentage of atretic oocytes: 1%) or a vitellogenic (GSI: 11.3%, percentage of vitellogenic oocytes: 10%, percentage of atretic oocytes: 5%) ovary using WIZ RNA isolation reagent without DNAse treatment (Ambion, Huntingdon, United Kingdom), according to the manufacturer's instructions. Each RNA sample (10 µg) was denatured at 70°C for 15 min in 50% formamide, 10% formaldehyde, 5% borax buffer 10x, 50 ng/µl ethidium bromide, and 5% bromophenol blue, separated by electrophoresis on a 1.2% agarose denaturing gel containing 16.8% formaldehyde and 10% borax 10x for several hours at 50 V under cold conditions to avoid denaturing the RNAs, and was then transferred to a Hybond-N nylon membrane (GE Healthcare, Orsay, France).
The cDNAs used for probe synthesis were obtained by PCR with the following primers: VTGR-S2 (5'-TGGCWCTGGATGCAGAC-3') and VTGR-AS2 (5'-CACATGTAGSNACAGCCTCC-3') for vldlr, SHF3-S4 (5'-ATGGTTGAGAGTTTTGTTGGGAC-3') and SHF3-AS1 (5'-GTACGTCCTCACTGCGAC-3') for fabp11, using S9A5 and S8A2 clones, respectively, as templates. PCR products of 748 bp for vldlr, from nucleotides +1415 to +2162 (numbered from the translation initiator codon), and 390 bp for fabp11, from nucleotides –30 to +360, were used as probes after purification, subcloning, and radiolabeling.
For 1 µg total RNAs isolated from various tissues with WIZ RNA isolation reagent (Ambion, Huntingdon, United Kingdom) RT-PCR was performed in a final volume of 20 µl using the M-MLV Superscript II Reverse Transcriptase RNase H Minus, 500 ng/µl universal Pt RACE primer, and 500 ng/µl hexamer random primers (Promega, Charbonnières les Bains, France) following the manufacturer's instructions. The females used, and thus the percentage of stage-frequency oocytes in histologic sections, are the same as those used for Northern blot analysis. The resulting total cDNAs were used to amplify vldlr, fabp11, and bactin transcript fragments by PCR in a final volume of 25 µl. S-og-S1 and S-og-AS1 primers were used for the vldlr+ transcript variant, and SHF3-S4 and SHF3-AS1 were used for fabp11. To design specific primers for a S. senegalensis bactin transcript, a fragment was amplified by standard PCR using ovary cDNAs as a template and degenerated FishBA1 (5'-ACATGGAGAAGATCTGGC-3') and FishBA2 (5'-GCRTACAGRTCCTTACGGA-3') primers, determined after alignment of teleost fish bactin transcripts currently available in GenBank (data not shown). After PCR product purification, subcloning in pGEMT-easy vector, and sequencing, the two specific primers were designed: S-BAC-S (5'-GACCTTCAACACTCCTGC-3') and S-BAC-AS (5'-GTCACACTTCATGATGCTG-3'). RT-PCR was performed under standard conditions, with 34 amplification cycles instead of 30 for vldlr. Annealing temperature was 57°C for bactin, 59°C for vldlr, and 62°C for fabp11 transcripts.
Both antisense and sense digoxigenin-labeled RNA probes were synthesized as previously described [45], with the So-VLDLR and So-FABP11 clones also used for Northern blot analysis. The probes were purified on ProbeQuant G50 microcolumns (GE Healthcare, Orsay, France) and checked for purity by denaturing agarose gel electrophoresis.
The sample treatment and sectioning procedure were as previously described [46], avoiding the acetylating step. The digoxigenin-labeled RNA probe was detected as previously described [47], and the resulting dark blue to purple color indicated localization of the transcripts. The sections were photographed using a digital DMX1200 camera and Eclipse E1000 microscope (Nikon, Champigny sur Marne, France).
Total RNAs were extracted from ovaries of 16 females sampled at different times of the year, corresponding to various GSIs and percentages of atresia, using Qiagen RNeasy Lipid Tissue Mini Kit (Qiagen, Courtaboeuf, France), including a DNaseI treatment step, according to the manufacturer's instructions. RNA was quantified using a NanoDrop ND-1000 spectrophotometer (Nyxor Biotech, Paris, France), with values of A260/A280 between 2.00 and 2.06, and total RNA integrity was checked by ethidium bromide staining in agarose borax gel. RT reactions were performed with 0.1 µg total RNA using the StrataScript qPCR cDNA Synthesis Kit (Stratagene), following the manufacturer's instructions. One RT negative control (without reverse transcriptase) was carried out for each sample.
Real-time quantitative RT-PCR (qPCR) amplifications were performed in triplicate for each sample in a final volume of 20 µl with 10 µl Brilliant SYBR Green qPCR master mix (Stratagene), 2 µl diluted (1:300) cDNA, and 0.5 µM (for vldlr and bactin transcripts) or 0.3 µM (fabp11 transcripts) oligodeoxyribonucleotide primers. Primers designed to amplify the 161-bp bactin, 169-bp vldlr, 219-bp fabp11 transcript sequences were Bact-So-S3 (5'-ACTGCTGCCTCCTCCTCCT-3') and Bact-So-AS3 (5'-ATGCTGTTGTAGGTTGTCTCGTG-3'), VTGR-So-S1 (5'-CTGTGTTTGAGGACCGAGTGTT-3') and VTGR-So-AS1 (5'-GAGCACCAGTTAGTTCCTGACA-3'), FABP11-So-S4 (5'-ATTTGATCCTGAGCGTGGAC-3') and FABP11-So-AS3 (5'-CGTCTGAGATCTCCCTCTCG-3'), respectively. The bactin primer sequences were designed from a published sequence [48]. Sequences were amplified using the MX 3000P qPCR thermal cycler instrument (Stratagene). The two-step qPCR profiles consisted of an initial denaturation step at 95°C for 10 min, followed by 30 (bactin) or 35 (vldlr and fabp11) cycles, as follows: 30 sec at 95°C, 30 sec at the specific primer pair-annealing Tm (61°C for bactin and fabp11 and 63°C for vldlr), and 30 sec at 72°C. After the amplification phase, 1 min of incubation at 95°C and 30 sec at 55°C, a ramp up to 95°C, at 0.01°C/sec, was performed in which data were collected in continuum to obtain a dissociation curve. The qPCR product sizes were checked on 2% agarose gel, purified, and sequenced. No amplification was observed in RT negative controls without enzymes, and no primer-dimer formation occurred in the nontemplate control, containing no cDNA.
In order to assess interrun reproducibility, three independent standard curves were generated, including one in the same run as the templates, using nine serial dilutions (from 4.0 to 0.016 ng) of a pool of first-strand cDNA template from all samples. Standard curves represented the cycle threshold (Ct) value as a function of the logarithm of the number of copies generated, defined arbitrarily as one copy for the most diluted standard. Efficiency of qPCR was always above 97.6%, and the correlation coefficient
0.992 for all target genes. In addition, a data quality control was performed [49] to determine whether differences in target transcript concentrations between samples resulted in different amplification efficiencies, thus biasing relative quantification. Nine samples representative of all stages of gonad development were amplified, in duplicate, at three serial dilutions for each gene (1:31, 1:310, and 1:3100), and the correlation between Ct and the logarithm (base 2)-transformed concentration of the template was examined.
To normalize the qPCR results, genomic DNA and total RNA concentrations were determined from 2 µl of the 1:100 dilution of the total tissue homogenate generated by the Qiagen RNeasy Lipid Tissue Mini Kit (Qiagen, Courtaboeuf, France). Before their extraction, genomic DNA and total RNAs were measured by Quant-iT dsDNA HS and Quant-iT RNA assay kits, respectively, using a Qubit Fluorometer (Invitrogen, Cergy Pontoise, France), following the manufacturer's instructions. Results were normalized by the RNA:DNA ratio and expressed as copy number of transcript per nanogram of genomic DNA. The amount of bactin transcript was also used to express the results as the number of copies of each target genes divided by the number of copies of this normalizing gene.
To analyze the qPCR data quality control results, the correlation model and SAS program (http://www.biomedcentral.com/content/supplementary/1471-2105-7–85-S1.sas [49]) were used with SAS statistical software (SAS Institute Inc, Cary, NC). Variations in normalized transcript levels were analyzed for statistical significance by linear regression and correlation using SigmaStat 3.1 software (Systat Software Inc, San Jose, CA). The significance level was set at 0.05.
Molecular Characterization of Two Splicing Variants of vldlr from S. senegalensis
The full-length Solea vldlr cDNA sequence, deduced from clone S9A5 and corresponding to VLDLR– splicing variant, was deposited in the GenBank/EBI Data Bank under accession number GenBank:AJ879619. The 3968-bp cDNA consisted of a 173-bp 5'-untranslated region, a 2547-bp open reading frame (ORF), and a 1248-bp 3'-untranslated region, including the poly(A) tail at position 3951. The ORF contained a deduced non-O-linked glycosylated VLDLR isoform. The predicted sequence of the deduced protein was 848 amino acids in length. A 27-amino acid signal peptide was predicted, resulting in a mature protein of 821 amino acids with a theoretical molecular mass of 90 595 Daltons. PCR on total cDNAs synthesized from a vitellogenic ovary with primers flanking the putative O-linked sugar domain region amplified a VLDLR+ transcript variant with an additional 60 bp in the open reading frame, leading to a 4028-bp cDNA. This resulted in a mature protein of 841 amino acids with a theoretical molecular mass of 92 612 Daltons (Fig. 1). Five potential GalNAc O-glycosylation sites were predicted in the putative O-linked sugar domain region.
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The VLDLR/VtgR showed a high degree of conservation among different vertebrate species. Comparison of deduced mature sole VLDLR+ amino acid sequence with human, chicken, and Xenopus laevis VLDLR/VtgR mature sequences revealed 69.5%, 69.8%, and 67% identity, respectively, whereas 83.4%–89.8% identity was found between sole VLDLR– sequence and homologous sequences from rainbow trout, tilapia, and white perch. Comparison with specific domains revealed a high conservation in the vertebrate lineage of the ligand-binding domain comprising type A ligand-binding repeats, also named LA repeat clusters and containing eight repeats with six cysteines each, which presumably mediate the folding of the domain into a rigid structure with clusters of negatively charged residues, which include the signature tripeptide SDE, on its surface. Also conserved are the EGF precursor domain consisting of type A, B, and C repeats; the LDLR repeat class B containing the YW(T)D repeat found in multiple tandem repeats and predicted to form a beta-propeller structure; a facultative O-linked sugar domain, a less conserved transmembrane domain, and a highly conserved cytoplasmic domain including the conserved FDNPVY motif putatively involved in the endocytosis of this receptor after ligand binding (Fig. 1).
Molecular Characterization and Phylogenetic Relationships of Fabp11 from S. senegalensis
The full-length sole fabp11 cDNA sequence, deduced from clone S8A2 and extended with 3'-RACE-PCR, was deposited in the GenBank/EBI Data Bank under accession number GenBank:AM501530. The 839-bp cDNA consisted of a 47-bp 5'-untranslated region, a 405-bp open reading frame, and a 370-bp 3'-untranslated region. The predicted sequence of the deduced protein was 134 amino acids with a theoretical molecular mass of 15 044 Daltons (Fig. 2).
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Alignment of the amino acid sequence of Solea Fabp11 with selected human FABPs (Fig. 2) and vertebrate FABPs previously characterized or extracted from sequence databases (see Supplemental Figure 1, available online at www.biolreprod.org), revealed 75.6%–85.1% identity with teleost fish species Fabp11, whereas 63.4% and 82.1% identity was recovered with the duplicated Fabp11 forms found in zebrafish. There was a much lower degree of identity with selected tetrapod FABP4/FABP5/FABP8/FABP9 (e.g., 54.5% and 52.2% with human FABP4 and FABP8, respectively) and vertebrate FABP3/FABP7 (e.g., 57.4% and 60.4% with human FABP3 and FABP7, respectively), and even less with vertebrate FABP1/FABP6/FABP10 (e.g., 27.1% and 23% with human FABP1 and FABP6, respectively) and FABP2 (e.g., 21.6% with human FABP2) types. The evolutionary relationship of vertebrate genes in the FABP family was evaluated after aligning selected protein sequences of each subfamily, and the phylogenetic analyses were conducted using NJ, ML, and BI (Fig. 3) methods. The phylogenetic tree separated with confidence into separate clusters FABP1/FABP6/FABP10 (group 1), FABP2 (group 2), and FABP3/FABP4/FABP5/FABP7/FABP8/FABP9/FABP11 (group 3) (NJ: 100; ML: 100; BI: 1.00). Significant internal branches of group 3 defined three FABP sequence subgroups. The first one was FABP3 subfamily (NJ: 80; ML: 82; BI: 1.00), and the second one was FABP7 subfamily (NJ: 99; ML: 92; BI: 0.97). The third subgroup formed a monophyletic branch, suggesting that these proteins arose from a common ancestror, and contained FABP4/FABP5/FABP8/FABP9/FABP11 subfamilies. Fabp11 was an additional FABP subfamily that seemed to be specific to teleost fish species (NJ: 97; ML: 97; BI: 1.00). Monophyly of teleost fish Fabp11 was also supported by the presence of an amino acid insertion at position 46 of Senegalese sole Fabp11 that is found in all teleost fish Fabp11 sequences currently available in sequence databases and not identified in the sequence of the other subfamilies of group 3 (i.e., FABP3/FABP4/FABP5/FABP7FABP8/FABP9). It should be noted that a similar unique amino acid insertion was present in group 1 but not in group 2 sequences. BI method supported with confidence that FABP11 subfamily was a sister clade of tetrapod FABP4/FABP5/FABP8/FABP9 cluster (BI: 0.97). This cluster contained tetrapod sequences only and has been split (BI: 1.00) into two significant internal branches, corresponding to FABP5 subfamily (NJ: 99; ML: 100; BI: 1.00) on one side and FABP4/FABP8/FABP9 (BI: 0.93) on the other side. It should be noted that identified duplicated zebrafish Fabp isoform sequences (i.e., Fabp1, Fabp7, and Fabp11) possibly resulting from the ancestral teleostean fish genomewide duplication were clustered with their respective subfamilies.
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Expression of vldlr, fabp11, and bactin in Adult S. senegalensis Tissues
Northern blot analysis of RNAs extracted from a previtellogenic ovary revealed an intense vldlr transcript band of around 4.0 kb, which corresponds to the size of the VLDLR+ and VLDLR– transcript variants (Fig. 4A). The same methodology applied to RNAs extracted from a vitellogenic ovary revealed a fabp11 transcript band of around 0.8 kb, corresponding to the size of the recovered transcript.
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RT-PCR using specific vldlr primers flanking the deduced O-linked sugar domain detected both mRNA transcript variants in ovaries in both previtellogenic and vitellogenic stages (Fig. 4B). However, there was a higher proportion of the smaller, 291-bp, amplified band, corresponding to the VLDLR– isoform, than of the 351-bp amplified band, corresponding to the additional 60-bp O-linked sugar domain of the VLDLR+ isoform (Fig. 4B). These two variants were also detected to a lesser extent in heart and adipose tissue, whereas the short transcript variant was also found in trace amount in liver, kidneys, muscles, and testicles. Tissue expression of fabp11 and bactin transcripts was also investigated by RT-PCR and showed that the specific products were amplified from the total RNAs of all tissues examined (Fig. 4B). Transcript levels of fabp11 were remarkably high in liver, adipose tissue, and vitellogenic ovaries, whereas a small amount was amplified from previtellogenic ovaries, heart, kidneys, and muscles, and trace amount was found in testicles. In the conditions used, bactin transcript was highly amplified from ovaries, kidneys, testicles, and heart, and to a lesser extent from liver, adipose tissue, and muscles.
Cellular Localization of vldlr and fabp11 Transcripts in S. senegalensis Ovaries
Ovarian development in Senegalese sole was group synchronous, with two groups of oocytes being observed: one developing and the second in a previtellogenic, resting stage. In situ hybridization studies were conducted on serial sections at different ovarian developmental stages, using an antisense probe able to detect both VLDLR+ and VLDLR– splicing variants. A strong vldlr hybridization signal was localized in the cytoplasm and nucleoli of previtellogenic oocytes (Fig. 5, A, C, and E), whereas hybridization with a sense probe resulted in no signal (Fig. 5, B, D, and F). The staining signal was also absent in vitellogenic oocytes, as well as in the surrounding granulosa and theca layers (Fig. 5E).
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The distribution of fabp11 mRNA in the ovaries revealed a hybridization signal in the cytoplasm of previtellogenic oocytes (Fig. 6, A, C, and E). A very strong signal was also observed in somatic cells of atretic follicles in both the previtellogenic (Fig. 6A) and vitellogenic (Fig. 6, C, E, G, and I) ovarian stages. Atretic follicles were characterized by the disintegration of the nucleus (Fig. 6E), zona radiata breakdown (Fig. 6G), and modification of the appearance of yolk globules (Fig. 6, E and G), as well as by an increase in the number and size of extra-oocyte follicular cells (Fig. 6, G and I), resulting in residual atretic follicles that strongly expressed fabp11 transcripts (Fig. 6, A and I). No staining signal was detected in vitellogenic oocytes (Fig. 6, C, E, G, and I) or in parallel sections treated with the sense probe (Fig. 6, B, D, F, H, and J).
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Differential Expression of vldlr, bactin, and fabp11 During Oogenesis as Evaluated by qPCR
The correlation model used for qPCR data quality control of nine representative samples revealed: first, a simple linear relationship for each gene and sample combination, with slopes not significantly different from –1; and second, very similar slopes for all three combinations of genes and samples that were not significantly different from each other (data not shown). This test confirmed the acceptability of the qPCR data and the absence of a sample dilution effect [49].
The expression level of bactin, vldlr, and fabp11 transcripts was determined by qPCR analysis of ovarian samples obtained from 16 females at different stages of gonad development. The level of bactin transcripts was initially determined with the intention of using it as a reference normalizing gene. However, it was later found that the quantity of transcripts fluctuated, depending on the oogenesis stage frequency profile. Expression of bactin had a significant positive correlation with the percentage of previtellogenic oocytes (data not shown) and a negative correlation with the percentage of vitellogenic oocytes (data not shown), thus hampering its use as a reference gene under these conditions. Other authors had already noticed that housekeeping genes are not always good as normalizing genes [50], and proposed other methods for normalizing qPCR or microarray data [51–53]. Consequently, in these experimental conditions, qPCR data (i.e., Ct converted into copy number through a dilution series standard curve) were normalized by the genomic RNA:DNA ratio. As assessed by visual counts on adjacent histologic ovarian sections, our results demonstrated a significant positive correlation between vldlr transcript levels and the percentage of previtellogenic oocytes (Fig. 7A), and a negative correlation with the percentage of vitellogenic oocytes (data not shown). In contrast, fabp11 transcript levels were not significantly affected by the percentage of previtellogenic (Fig. 7B) and vitellogenic (data not shown) oocytes in the samples.
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Probably due to the high amount of somatic cells around the atretic oocyte (Fig. 6, E, G, and I), normalization by the genomic RNA:DNA ratio did not give any strong correlation between vldlr or fabp11 transcript levels and the percentage of atretic follicles in histologic samples. However, bactin could be used as a reference gene for atresia, as no correlation was observed between bactin transcript levels and the percentage of atretic follicles in the ovary (data not shown). No change in vldlr expression was detected in relation to the percentage of atretic follicles (Fig. 8A). In contrast, fabp11 transcript levels were correlated significantly with the percentage of atretic follicles in ovarian histologic sections (Fig. 8B). It should be noted that in farmed Senegalese sole, atresia occurred at all stages of follicle development, but its prevalence was significantly correlated with the number of vitellogenic oocytes (data not shown).
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Oocyte growth, particularly in oviparous species, is characterized by the intense deposition of products (e.g., RNAs, proteins, lipids, vitamins, and hormones) that enable the subsequent development into a viable embryo. The avian VLDLR, also termed LDLR relative with 8 binding repeats (LR8) or VtgR, is a receptor of VLDL and of Vtg, as documented by both biochemical and genetic evidence in chicken [54, 55]. These lipoproteins are selectively sequestered by growing oocytes due to receptor-mediated endocytosis [55, 56]. The overall modular structure of mammalian VLDLR is virtually superimposable with that of human LDLR, except that its ligand-binding domain contains eight LA repeats rather than seven [57]. The vertebrate VLDLR exists in variant forms arising from differential splicing. The longer and predominant splice form in mammalian tissues contains an additional exon specifying an O-linked sugar domain similar to that always present in LDLRs (28–30 amino acids long). Chicken oocytes, on the other hand, express a shorter variant, named LR8–, coding a receptor without the O-linked sugars, whereas the somatic cells and tissues, particularly the granulosa cells surrounding the oocytes, express predominantly LR8+ [55, 58, 59]. The function of the O-linked sugar domain is unclear, although it has been suggested to be responsible for controlling receptor recycling and degradation [60, 61].
VLDLRs of a few teleost fish species were previously characterized and showed a very high degree of amino acid identity to Xenopus [62] or chicken [54] VLDLR sequences. Coho salmon (Oncorhynchus kisutch) VLDLR was identified by ligand blotting and showed cross-reactivity with the chicken and Xenopus systems, both in terms of ligand recognition and immunoreactivity. In addition, its ligand-binding activity is inhibited by the polyanionic drug suramin [63], a property also demonstrated by other receptors of the lipoprotein receptor superfamily in oviparous animals [23]. The biochemical characterization of VLDLR from white perch revealed a specific and saturable binding of autologous Vtg to extracts of ovarian membranes displaceable by chicken egg yolk VLDL and having sensitivity to suramin [64]. Molecular cloning of VLDLR cDNA from rainbow trout resulted in the characterization of a 97-kDa protein containing a ligand-binding domain with eight LA repeats, lacking an O-linked sugar domain, and putatively endocytically active via an FDNPVY motif in the cytoplasmic domain [38]. The molecular characterization of a homologous receptor in both white perch [64, 65] and tilapia [66] demonstrated, as in rainbow trout, the presence of an ovarian lipoprotein receptor with eight LA repeats, lacking an O-linked sugar domain, and highly expressed in the ovaries, as previously demonstrated in chicken. A second cDNA, differing by a stretch of 105 nucleotides encoding an O-linked sugar domain, has been identified in rainbow trout and was expressed, in addition to the ovary, in muscles, liver, spleen, heart, and intestine [67]. PCR-based evidence of the expression in several tissues of the two splice variants lacking or containing 20 residues in the region normally corresponding to an O-linked sugar domain was obtained in tilapia [66]. Consistent with these findings, our data demonstrated the presence, in Senegalese sole ovaries, of two VLDLR isoforms with high sequence similarity to human VLDLR and chicken VLDLR/VtgR/LR8, one containing the O-linked sugar domain and the other not containing it. There was a higher proportion of the shorter transcript variant in the ovaries, a variant that was detected in low amounts in adipose tissue, heart, liver, kidneys, muscles, and testicles, whereas the longer variant was also significantly found in ovaries, adipose tissue, and heart. The isoform with a putative O-linked sugar domain found in ovarian and extraovarian tissues might contribute to the clearance of VLDL, a lipoprotein class containing apolipoprotein B (apoB) in teleost fish [68, 69], similarly to tetrapod vertebrate species, and present at high plasma concentrations in previtellogenic and early vitellogenic stages in rainbow trout [70]. The ligand-binding properties of the LA repeats of the tilapia VLDLR were tested in a semiquantitative yeast two-hybrid protein-protein interaction system that revealed the critical properties of the first three LA repeats in the Vtg binding region containing a motif known to be homologous to positively charged LR-binding motifs in mammalian apoB-100 and apolipoprotein E (apoE) [66]. These LA clusters are thought to participate in the binding of lipoprotein(s) via positively charged residues on apoB-100 or apoE [22]. The lack of the O-linked sugar domain did not affect the binding of the receptor to its ligands [66]. This receptor-binding domain was also detected by sequence homology in teleost fish apoB [71] and apoE [72, 73], the latest apolipoprotein not being detected in birds [23].
In situ hybridization studies performed on ovarian sections of Senegalese sole showed a high vldlr transcript level during previtellogenesis, and qPCR data demonstrated a significant positive correlation between vldlr transcript level and percentage of previtellogenic oocytes. Expression of bactin also had a significant positive correlation with the percentage of previtellogenic oocytes, thus hampering its use as a reference gene under these conditions. The nucleoli storage of vldlr mRNA during previtellogenesis, the disappearance of the hybridization signal in vitellogenic oocyte, and the significant negative correlation between vldlr transcript levels and the percentage of vitellogenic oocytes indicate, as previously suggested in rainbow trout [32] and chicken [74], that VLDLR is translated predominantly at early stages of oocyte development and is stored inside the cytoplasm to be gradually mobilized and recycled to the oocyte surface after the appearance of Vtg in the plasma (i.e., during the vitellogenic growth phase). The very low level of vldlr mRNA at the end of folliculogenesis was supported by qPCR data obtained in white perch [65] and by the absence of such transcript from the transcriptome of zebrafish fully grown ovarian follicles as determined by serial analysis of gene expression [47]. Data obtained in the present study also revealed that vldlr transcript hybridization signal was not detected in atretic follicles nor their levels, assessed by qPCR, correlated with percentage of atresia. These results indicate that vldlr transcript level may be used as a precocious functional molecular marker of the number of oocytes recruited for vitellogenesis.
Follicle atresia in diverse vertebrate species has been shown to result from apoptotic cell death initiated within the granulosa cell population [7, 8], or it may originate from apoptosis initiated first in the oocyte [8, 75]. It has been demonstrated that fish oocytes produce factors that modulate follicular functions and that proteolysis through lysosomal enzymes of oocyte yolk proteins may lead to follicular atresia [12, 76] without a widespread follicular apoptosis [12]. There is a preliminary report of choriolysin expression during atresia of white perch, which might be related to degradation of the zona radiata [77]. As atresia advances, the yolk content of the atretic follicles is gradually digested and reabsorbed, resulting in the formation of corpora atretica and aggregates primarily composed of pigments and oxidized lipids [1, 4, 35]. A massive transfer of some yolk proteins and possibly lipids, combined with high-density lipoproteins in the bloodstream, has been demonstrated in rainbow trout [34] and chicken [78] during the course of follicular atresia.
FABPs are a group of low-molecular weight (14–15 kDa) cytoplasmic proteins belonging to the conserved multigene family of intracellular lipid-binding proteins. Together with two other families of ligand-binding proteins, lipocalins and avidins, FABPs form part of an overall structural superfamily: calycins [79]. In mammals, at least nine different FABP types have been identified, with tissue-specific distribution [25, 26, 80, 81] and distinct patterns of fatty acid interactions [82, 83]. They are generally named after the tissue in which they were discovered or are prominently expressed. However, their expression is not exclusive, and more than one FABP may be found in a given cell or tissue, so a numerical nomenclature has been introduced to distinguish among the various FABP genes [84]. An additional type (FABP10) was recently characterized in nonmammalian species, including teleost fish [26, 85]. Our BI analysis demonstrated that all FABP protein subfamilies found in teleost fish correspond to the human subfamilies, with the exception of a single FABP subfamily, clustered in a sister group of tetrapod FABP4/FABP5/FABP8/FABP9, which is found only in teleost fish and is named here FABP11. The S. senegelensis Fabp sequence characterized in this study is part of this newly defined FABP11 subfamily, which also includes sequences previously characterized from Antartic teleost fish species [86].
FABPs are ubiquitously expressed in vertebrate and nonvertebrate tissues, with distinct expression patterns for individual FABPs [25, 87]. The primary role of all FABP family members is to regulate fatty acid uptake and intracellular transport. Other known functions are targeting fatty acids to specific metabolic pathways and involvement in regulating gene expression and cell growth [25, 26]. Rat ovaries express FABP2 and FABP3, as demonstrated by their immunohistochemical localization in interstitial cells of the theca interna [27], in somatic cells during postnatal development and in immature ovaries treated with gonadotropins [28]. In this species, fabp3 expression was downregulated and fabp5 expression was upregulated in theca cells of the rat ovary after human chorionic gonadotropin administration [31]. Immunodetection performed on mice ovaries revealed FABP3 in interstitial gland cells and theca cells [29], FABP4 in apoptotic granulosa cells of atretic antral follicles [30], and FABP5 in a specific population of ovarian macrophages in advanced atretic follicles [29].
It has been shown that zebrafish fabp3 mRNA was abundant and restricted to the ooplasm of previtellogenenic oocytes [33], whereas a low level of this transcript was detected in the transcriptome of fully grown ovarian follicles [47]. Our data indicated that sole fabp11 transcript was highly expressed in the ovaries, liver, and adipose tissue, and to a lower extent in heart, muscles, kidneys, and testicles. In situ hybridization analysis demonstrated that sole fabp11 transcript is expressed in previtellogenic oocytes, whereas no hybridization signal was detected in the larger oocytes. However, contrary to vldlr mRNA, a very strong fabp11 hybridization signal was detected in the somatic layers of atretic follicles. Furthermore, a significant linear-positive correlation between sole fabp11 transcript level and the percentage of atresia in ovarian samples was demonstrated by qPCR. This high transcript level has been identified in hypertrophied somatic cells during oocyte fragmentation, follicular cell invasion of the space occupied by the oocyte and elimination of cellular remnants, and degeneration of atretic follicles. These cells may have also a high content of cellular nucleic acid-binding protein, as previously shown in degenerating and atretic follicles of zebrafish ovary [88]. During the process of follicular atresia in mice, the invasive granulosa cells found between the zona pellucida and the oocyte may have a macrophage-like cell function for the elimination of oocytes from atretic follicles [89]. Additional studies are needed to determine the nature and origin of the numerous invasive fabp11-expressing cells found into the Senegalese sole atretic follicles. FABPs undoubtedly play an essential role in cellular fatty acid transport and utilization. In the vertebrate ovary, a differential role of FABP subtypes may be related to the changes in the efficient uptake, intracellular transport, and utilization of fatty acids accompanying folliculogenesis, atresia, and hormone synthesis. High expression levels of fabp11 transcripts in somatic cells of atretic follicles suggest the possible importance of lipid-metabolic processes and involvement of Fabp11 and/or its ligand fatty acids in the process of follicular atresia.
In conclusion, the present study has shown that the quantification of vldlr and fabp11 transcripts by qPCR may allow, through linear regression analysis, determination of the percentage of oocytes recruited for vitellogenesis and those undergoing atresia. These markers may undoubtedly help to identify factors that may be involved in the regulation of follicular growth and degeneration in the teleost fish ovary and would help improve breeding conditions to reduce stress leading to atresia in female ovaries, as well as improve the understanding of the reproductive biology of reared stocks.
ACKNOWLEDGMENTS
We wish to thank Anja Knoll-Gellida for advice. Fish maintenance by Josep Ll. Celades and Joaquín Canoura is gratefully acknowledged.
FOOTNOTES
1Supported by the French Ministry of Research and Education to P.J.B, and by the Junta Asesora de Cultivos Marinos (JACUMAR, Spain) and Reference Center in Aquaculture (Spain) to J.C. M.J.A. was supported by a predoctoral fellowship from the Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA, Spain). S.M. was supported by a postdoctoral fellowship from the French government. ![]()
Correspondence: 2Patrick J. Babin, Génomique et Physiologie des Poissons, Université Bordeaux 1, UMR NuAGe, Avenue des Facultés, Bât. B2, 33405 Talence Cedex, France. FAX: 33 540008915; e-mail: p.babin{at}gpp.u-bordeaux1.fr
Received: 16 March 2007.
First decision: 16 April 2007.
Accepted: 25 May 2007.
REFERENCES
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